# 常见的 marker 基因以及一些文章的单细胞代码

# 人类细胞 marker

Cell type Cell-type specific markers
Astrocyte AGXT2L1, GFAP, ALDOC, SLC1A3, AGT, ALDH1L1
B cell CD19, MS4A1, BANK1, BLK, IRF8, ABCB4, ABCB9, AFF4, AIDA, AIM2
Endothelial cell VWF, PECAM1, CDH5, VEGFA, FLT1, ECSCR, ACYP1, ADGRL2, SELE, ICAM1
Epithelial cell CDH1, MYLK, ANKRD30A, ABCA13, ABCB10, ADGB, SFTPB, SFTPC
Erythrocyte ALAS2, CA1, HBB, HBE1, HBA1, HBG1, GYPA
Fibroblast COL1A1, COL3A1, THY1, NECTIN1, FAP, PTPN13, C5AR2, LRP1
GMP CD38, KIT, ADK, CD123, ALDH4A1, ANXA1, AP3S1, APLP2, APPL1, AREG, ASPM, CDKN3, CLSPN, DEPDC7, MCM10, MUCB2, SDC4, RMI2
HSC CD34, ITGA5, PROM1, CD105, VCAM1, CD164, THY1, KIT, ACE, CMAH, ABCG2, CD41, ALDH1A1, BMI1
Macro/Mono/DC CD68, CD14, MRC1, BHLHE40, CD93, CREM, CSF1R, CCL18, ICAM4, ACPP, ACSL3, ADGRE2, ADGRE3, CD209, CD83, CD1A
Malignant cell EPCAM, FOLH1, KLK3, KRT8, KRT18, KRT19
Mast cell SLC18A2, ADIRF, ASIC4, BACE2, ENPP3, CADPS, CAPN3, CDK15, CMA1, GCSAML, MAML1, MAOB, CAVIN2
Myeloid cell PTPRC, CD14, AIF1, TYROBP, CD163
Neuron STMN2, RBFOX3, MAP2, TUBB3, CSF3, DLG4, ENO2
Neutrophil ADGRG3, CXCL8, FCGR3B, MNDA, USP10, CSF3R, ANXA3, AQP9, BTNL8, LGALS13, G0S2, NFE4, IL5RA
NK cell FCGR3A, KLRB1, KLRD1, NKG7, XCL1, XCL2, NCR3, NCR1, CD247, GZMB, KLRC1, KLRK1
Oligodendrocyte MOG, OLIG1, OLIG2, PDGFRA, PLP1, MBP, MAG, SOX10
Plasma cell MZB1, BRSK1, AC026202.3, JSRP1, LINC00582, PARM1, TAS1R3
Progenitor CD38, CASR, ALDH, CAR, KDR, MME, FLT3, CD90, CD123
T cell CD3D, CD3G, CD3E

# 小鼠细胞 marker

  1. B 细胞(B cell)
    • 标记基因: Blnk, Cd79a, Cd79b
  2. 浆细胞(Plasma)
    • 标记基因: Jchain
  3. T 细胞(T cell)
    • 标记基因: Cd3d, Cd3e, Cd3g
  4. 巨噬细胞(Macrophage)
    • 标记基因: Itgax
  5. 树突状细胞 (DC)
    • 标记基因: Fcgr2b, Cd209a, Itgam
  6. 腔内 AV 细胞 (Luminal AV)
    • 标记基因: Mfge8, Trf, Csn3, Wfdc18, Elf5, Ltf
  7. 腔内 HS 细胞 (Luminal HS)
    • 标记基因: Prlr, Cited1, Pgr, Prom1, Esr1
  8. 肌上皮细胞 (Myoepithelial)
    • 标记基因: Krt17, Krt14, Krt5, Acta2, Myl9, Mylk, Myh11
  9. 成纤维细胞 (Fibroblast)
    • 标记基因: Col1a1, Col1a2, Col3a1, Fn1
  10. 血管细胞 (Vascular)
    • 标记基因: Pecam1, Cdh5, Eng, Pdgfra, Pdgfrb, Fap
  11. 周细胞 (Pericyte)
    • 标记基因: Rgs5, Des, Notch3

# 文章及代码

# Comprehensive single-cell aging atlas of healthy mammary tissues reveals shared epigenomic and transcriptomic signatures of aging and cancer

https://github.com/UcarLab/Mammary_gland_aging

# Molecular and genetic insights into human ovarian aging from single-nuclei multi-omics analyses

https://github.com/ChenJin2020/Molecular-and-genetic-insights-into-human-ovarian-aging-from-single-nuclei-multi-omics-analyses